Quickphyre results for job P42898___
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Structural Bioinformatics Group Imperial College London
[Phyre Server: 0.1][Fold Library (SCOP):][Fold Library (PDB): ][NR sequence DB: ][Dynamic FR engine: 1.0]

QuickPhyre Results for Job P42898___

Please cite:

Protein structure prediction on the web: a case study using the Phyre server.
Kelley LA & Sternberg MJE Nature Protocols. 4, 363 - 371 (2009) [pdf]

Email: clockha2@gmu.edu
Job Code: 809450c270b835c7
Description: P42898___
Date: Mon Nov 14 04:49:59 GMT 2011


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Secondary Structure Prediction
Index.........10.........20.........30.........40.........50.........60.........70.........80.........90.........100.........110.........120.........130.........140.........150.........160.........170.........180.........190.........200.........210.........220.........230.........240.........250.........260.........270.........280.........290.........300.........310.........320.........330.........340.........350.........360.........370.........380.........390.........400.........410.........420.........430.........440.........450.........460.........470.........480.........490.........500.........510.........520.........530.........540.........550.........560.........570.........580.........590.........600.........610.........620.........630.........640.........650.....
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
psipred   ccccccccccccccccccccccccccccccccccccccch h h h h h h h h h h h h h h ccce e e e e e e e ccccch h h h h h h h h h h h h h h cccce e e e ccccccccccccccch h h h h h h h h h h cccce e e e e cccccch h h h h h h h h h h h h cccce e e e e e ccccccccccccccccch h h h h h h h h h h ccccce e e e e e cccccccccch h h h h h h h h h h h h cccce e e e e cccch h h h h h h h h h h h h cccccce e e ccccccch h h h h h h h h h cccccch h h h h h h h h cccch h h h h h h h h h h h h h h h h h h h h ccccce e e e e cccch h h h h h h h h h ccccccccccccccccccccccccccccce e e cccccce e e e e cch h h cccccccccccccccccccccccccccccch h h h h h h ccccccch h h h h h h h h h h h cccccccccccccccccccccch h h h h h h h h h h h h h h cce e e e ccccccccccccccccccccccce e e e e e h h h h ccch h h h h h h h h h h h cccce e e e e e e e ccccccccccccccce e e e e e e cccccccccccch h h h h h h h h h h h h h h h h h h h h ccccccch h h h h h h h h h ce e e e e e e e ccccch h h h h h h h h h h h h h h ccccccccccccc
jnet   ccccccccccccccccccccccccccccccccccccccccccch h h h h h h h ccccccce e e e e e cccccccch h h h h h h h h h h h h cccce e e e e e ccccccccccch h h h h h h h h h h h h cccce e e e e e ccccch h h h h h h h h h h h h h ccce e e e e ccccccccccccccccch h h h h h h h h h h h ccccce e e e e ccccccccccch h h h h h h h h h h h h cccce e e e e e e cch h h h h h h h h h h h h ccccce e e e cccccch h h h h h h h h h h ccccch h h h h h h h h h cccch h h h h h h h h h h h h h h h h h h h h cccccce e e e e ccch h h h h h h h h h h ccccccccccccccccccccccccccce e e e e cccce e e e e e ccccccccccccccccccccccccccccccccccch h h h h e e ccccccch h h h h h h h h h h h ccccccccccce e ccccccccch h h h h h h h h h h h h ccccce e e cccccccccccccce e e cccccce e e e h h h h e e ccch h h h h h h h h h h h ccccce e e e e e cccccccccccccccce e e e e e cccce e e cce e e e h h h h h h h h h h h h h h h h h h h h h ccccccch h h h h h h h ccce e e e e e e cccccccch h h h h h h h h h h h h ccccccccccccc
sspro   cccccccccccccccccccccccccccccccccccccccccch h h h h h h h h h h h cccce e e e e e ccccccch h h h h h h h h h h h h h cccce e e e e ccccccccccccch h h h h h h h h h h h ccccce e e e e e cccch h h h h h h h h h h h h cccce e e e e e ccccccccccccccccch h h h h h h h h h h ccccce e e e e ccccccccccch h h h h h h h h h h h h h ccce e e e e cccch h h h h h h h h h h h h cccce e e e cccccccch h h h h h h h h ccccccch h h h h h h h h cccch h h h h h h h h h h h h h h h h h h h h cccccce e e e e ccch h h h h h h h h h h ccccccccccccccccccccccccccce e e e e ccccce e e e e ccccccccccccccccccccccccccccccccccch h h h h h h h cccccch h h h h h h h h h h h ccccccccce e e e ccccccccch h h h h h h h h h h h h h h ccce e e ccccccccccccccccccccccce e e e e e e e e e e cch h h h h h h h h h h h ccccce e e e e e e cccce cccccccccce e e e e e cccce e e e ce e e ch h h h h h h h h h h h h h h h h h h h h h ccccch h h h h h h h h h cce e e e e e e ccccccch h h h h h h h h h h h h h ccccccccccccc
Consensus   cccccccccccccccccccccccccccccccccccccccccch h h h h h h h h h h h cccce e e e e e ccccccch h h h h h h h h h h h h h cccce e e e e ccccccccccccch h h h h h h h h h h h cccce e e e e e ccccch h h h h h h h h h h h h cccce e e e e e ccccccccccccccccch h h h h h h h h h h ccccce e e e e ccccccccccch h h h h h h h h h h h h cccce e e e e cccch h h h h h h h h h h h h ccccce e e e ccccccch h h h h h h h h h cccccch h h h h h h h h cccch h h h h h h h h h h h h h h h h h h h h cccccce e e e e ccch h h h h h h h h h h ccccccccccccccccccccccccccce e e e e ccccce e e e e ccccccccccccccccccccccccccccccccccch h h h h h h ccccccch h h h h h h h h h h h ccccccccccce e ccccccccch h h h h h h h h h h h h h h ccce e e ccccccccccccccccccccccce e e e e e h h e e ccch h h h h h h h h h h h ccccce e e e e e e ccccccccccccccce e e e e e cccce e e cce e e ch h h h h h h h h h h h h h h h h h h h h ccccccch h h h h h h h h cce e e e e e e ccccccch h h h h h h h h h h h h h ccccccccccccc
Cons_prob  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
 
Disorder Prediction
Index.........10.........20.........30.........40.........50.........60.........70.........80.........90.........100.........110.........120.........130.........140.........150.........160.........170.........180.........190.........200.........210.........220.........230.........240.........250.........260.........270.........280.........290.........300.........310.........320.........330.........340.........350.........360.........370.........380.........390.........400.........410.........420.........430.........440.........450.........460.........470.........480.........490.........500.........510.........520.........530.........540.........550.........560.........570.........580.........590.........600.........610.........620.........630.........640.........650.....
Disopred  dddddddddddddddddddddddddddddddddddddddoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooddddoooooooooooooooooooooooooooooooooooooooooooooooooooooooooodddddddddddddoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooodddddoooooooooooooooooooooooooooooooooooooooooooooooooododdddddddddddddddddodooddooddddodddddooooooooooooooooooooooooooododdddddooooooooooooooooooooooooooooodddddoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooododdddoooooooooooooooooooooooooooooooooooooooooooodoodoooooooooooooooooooooooooooooooooooooooddoddddddddddd
Diso_prob 99999996998777788999999999999999999998844444444444442201000000000001101110000001000000000000000024565544544333100012100100000000102010110001010000000000000010026898788987866211011001124333023100000000121021211000000000000000000000000000000000000000000001102243321141100222111111000011155887442000000000000000001001000000000120000000000122335477898877798899987535445544576546686533101001020111132121122233254676668443322311214424224100000001125676742200011233332423312210000101111021100234443442113141001100000000000000013100000112432200000001423442452676630100000000000101221121020000110112213222331522742231000000000000000111102220000013122466456679999999
Prosite                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 

FINALLY - a new fold library has been installed! Let me know if you have any problems.

To predict functional residues and GO classification, try ConFunc
Fold Recognition
View AlignmentsSCOP CodeView ModelE-valueEstimated
Precision		BioTextFold/PDB descriptorSuperfamilyFamily(beta-test)
alignments d1b5ta_
(length:275)
32% i.d.
6.9e-38100 % n/a TIM beta/alpha-barrel FAD-linked oxidoreductase Methylenetetrahydrofolate reductase n/a
alignments c2fmnB_
(length:304)
29% i.d.
1e-37100 % n/a PDB header:oxidoreductaseChain: B: PDB Molecule:5,10-methylenetetrahydrofolate reductase; PDBTitle: ala177val mutant of e. coli methylenetetrahydrofolate2 reductase complex with ly309887 n/a
alignments d1v93a_
(length:292)
37% i.d.
1.2e-37100 % n/a TIM beta/alpha-barrel FAD-linked oxidoreductase Methylenetetrahydrofolate reductase n/a
alignments d1qopa_
(length:267)
10% i.d.
0.01695 % n/a TIM beta/alpha-barrel Ribulose-phoshate binding barrel Tryptophan biosynthesis enzymes n/a
alignments c2v8zC_
(length:343)
11% i.d.
0.01695 % n/a PDB header:lyaseChain: C: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 n/a
alignments d2liva_
(length:344)
11% i.d.
0.01795 % n/a Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like n/a
alignments c2ekcA_
(length:262)
12% i.d.
0.01795 % n/a PDB header:lyaseChain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 n/a
alignments d1o5ka_
(length:295)
12% i.d.
0.01995 % n/a TIM beta/alpha-barrel Aldolase Class I aldolase n/a
alignments d1wa3a1
(length:202)
10% i.d.
0.01995 % n/a TIM beta/alpha-barrel Aldolase Class I aldolase n/a
alignments c2ehhE_
(length:294)
14% i.d.
0.02195 % n/a PDB header:lyaseChain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus n/a