QuickPhyre Alignment of query sequence to fold library protein d1qopa_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60....:....70....:....80....:....90....:....100....:....110...        .:....120....:....130....:....140....:....150....:...    .160....:         ....170....:....180....:....190....:....200....:....210....:.. ..220....:....230..  ..:....240....:....250....:....260....:....270             ....  :....280   ....:....          290....:....300..      ..:....310....:....320....:....330....:..    ..340....:....350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %-----------------------------------------------------------------------------------------------------------------        ---------------------------------------------    -------         ---------------------------------------------------- ---------------  --------------------------------------             ----  ------   ---------          -------------      -----------------------------------    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %-----------------------------------------------------------------------------------------------------------------        ---------------------------------------------    -------         ---------------------------------------------------- ---------------  --------------------------------------             ----  ------   ---------          -------------      -----------------------------------    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %-----------------------------------------------------------------------------------------------------------------        ---------------------------------------------    -------         ---------------------------------------------------- ---------------  --------------------------------------             ----  ------   ---------          -------------      -----------------------------------    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %-----------------------------------------------------------------------------------------------------------------        ---------------------------------------------    -------         ---------------------------------------------------- ---------------  --------------------------------------             ----  ------   ---------          -------------      -----------------------------------    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)22221321212143123000000000000000014123600000000000000023221212421431000101120101112011021221221010111001010021112        112111121112252231212111211121110113212132325    4121111         0111112022113211211111101111211231132111111011012114 111431222342233  11020131111110110132113223102121102211             1232  113112   111211111          1111011121111      01110111101011225232231110101321122    1111111111322111110211211131231222122213111732444434431124244212132111000000000000273141121132112311321310000101111145111221232013111311231132331223511321121221245421232233223222321111111311111101011123212112110231111112233733442132123322211241171332412601071124211212212310212223332232334111212511211121011121111221112
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                              XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHH--------HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC----CCCCCCC---------CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHH-------------HCCC--CCCHHH---HHHHHHCCC----------CHHHHHHHHHHHH------HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIA--------STAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRG----DPIGDQW---------EEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEK-VSAGADFIITQLFFE--ADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVK-------------LSKL--EVPQEI---KDVIEPIKD----------NDAAIRNYGIELA------VSLCQELLASGLVPGLHFYTLNREMATTEVLKRLG----MWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                                                                         ++++++-----++++++-+-++++--++++++-++++ +++-+ +    ++--+-+         -++++---+-+++++-+++++-+ +-+-+-++  -++   -+++-++++-++ ++++++-++   +-+  ++--+++++++++++++ +++- +-+-+++++++++++             --++  ++++++   +++++++-+          ++++++++--+-+      --+++++-++++-+-      --++++++++++++                                                                                                                                                                                                                                                                                                                                   
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
d1qopa_ Sequence-----------------------------------------------------------------------------------------------------------------MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGA-DALEL-GVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPT-IPIGLLMY--ANL---VFNNGIDAFYARCEQVGVDSVL---VADVPVEESAPFRQAALRHNIA-PIFI-CPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPK------QMLAELRSFVSAMKAASR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1qopa_ Predicted Secondary Structure-----------------------------------------------------------------------------------------------------------------CCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-CEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-CCEEHHHH--HHH---HHHCCHHHHHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHCCCC-EEEE-ECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHH------HHHHHHHHHHHHHHHHCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1qopa_ Known Secondary Structure----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Template Functional Sites                                                                                                                                      f                           f          ff   f                                    f f                             f    f                        f                      f   f   fff                       ffff                 fffff                                                                                                                                                                                                                                                                                                                                                                      
Model Pockets/Cavities/Clefts                                                                                                                         1        1                            1 1        3 3                   3                  1  4 43         3 3    3    4                                11 1222                            2 11    1  2                               22                                                                                                                                                                                                                                                                                                                                                                              
Consensus Function 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000        200000000200010000000000000000000000002020000    0000200         0000000000000000000000000200000300000000000000000000 000000001000000  00000000000000002202111000000000000000             1033  002001   000000000          0000000001100      00000000000000000000000000000000000    0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                                                                  ....:....10....:....20....:....30....:....40....: ....50 ....:....60....:....70....:....80....:....90.... :....100..  ..:   ....110....:....120....:..   ..130....:....140....:.... 150... .:....160....:....170....:....180....:....190....:....200....:....210....:....220....:....230....:....240....:....      250....:....260....:..                                                                                                                                                                                                                                                                                                                              

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found