QuickPhyre Alignment of query sequence to fold library protein c2v8zC_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60...                                       .:....70..  ..:....80....:....90....:....100....:....110....:....120  ....:....130....:....140....:....150....:....160....:....170....:....180.... :....190....:....200....:....210....:....220....: ....230....:....240....:....250....:....260....:....270....:         ....280....:.. ..290....:....300..  ..:.           ...310....:....320    ....  :....330....:....340....:....350....:.... 360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %---------------------------------------------------------------                                       ---------  ------------------------------------------------  ---------------------------------------------------------------- ----------------------------------------- --------------------------------------------------         ------------ ---------------  ----           --------------    ----  ----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %---------------------------------------------------------------                                       ---------  ------------------------------------------------  ---------------------------------------------------------------- ----------------------------------------- --------------------------------------------------         ------------ ---------------  ----           --------------    ----  ----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %---------------------------------------------------------------                                       ---------  ------------------------------------------------  ---------------------------------------------------------------- ----------------------------------------- --------------------------------------------------         ------------ ---------------  ----           --------------    ----  ----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %---------------------------------------------------------------                                       ---------  ------------------------------------------------  ---------------------------------------------------------------- ----------------------------------------- --------------------------------------------------         ------------ ---------------  ----           --------------    ----  ----------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213212121431230000000000000000141236000000000000000232212124                                       214310001  011201011120110212212210101110010100211121121111  2111225223121211121112111011321213232541211110111112022113211211 11110111121123113211111101101211411143122 23422331102013111111011013211322310212110221112321         131121112111 111111011121111  0111           01111010112252    3223  11101013211221111111111322111110211 211131231222122213111732444434431124244212132111000000000000273141121132112311321310000101111145111221232013111311231132331223511321121221245421232233223222321111111311111101011123212112110231111112233733442132123322211241171332412601071124211212212310212223332232334111212511211121011121111221112
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                           XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE---------------------------------------ECCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-EEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC---------CCHHHHHHHHHC-CCCHHHHHHHHHHHH--HHHH-----------HHHHHCCCCCCEEE----EECC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLE---------------------------------------FFPPRTAEG--AVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC--GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRS-EFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFI-ITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE---------VPQEIKDVIEPI-KDNDAAIRNYGIELA--VSLC-----------QELLASGLVPGLHF----YTLN--REMATTEVLKRLGMWTEDPRRPLPWALSAHPKRRE-EDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                                                      +-+-++++-  ++++++-++++-+++++++-+----++-++-++--- +++++++++++  ++-++++  +-+-+-++--++++++++++++ ++++   +++--+++++      -+++++-++ --+-++-+-+--++++-----++++ ++++++-+--   ++ +-----++++++++++++++++-+--++++    +++--++-++  -+++         +++++++-++++ +++-++++++--+++  ++++           +-+--++++++---    -+++  +-+++++++++++++-++-+++-+     ++++++                                                                                                                                                                                                                                                                                                          
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
c2v8zC_ Sequence---------------------------------------------------------------MGSSHHHHHHSAGENLYFQGQQGDLMPQSALFTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEER-KAIARFAIDHVDRRVPVLIG--TGGTNARETIELSQHAQQAGAD-GIVV---INPYYWKVSE------ANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPAL-VKTLADSRSN---IIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLCG----YDDHLFNTLL--LGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLKLCCGRTRAPPP-----PPLRSGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
c2v8zC_ Predicted Secondary Structure---------------------------------------------------------------CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCC-EEEE---CCCCCCCCCH------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHH-HHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC----CHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCC-----CCCCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
c2v8zC_ Known Secondary Structure-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                                                           11    1                2                    11            2                                2                                                                                                2                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Consensus Function 000000000000000000000000000000000000000000000000000000000000000                                       000003300  300000000000000001000000000000000000003300000000  0010000000000000000000000000000000010000000000000000000000000000 00000000000000000000000000000000000000000 00000000000000000000000001000000000000000000000000         000000000000 000000000000000  0000           00000000000000    0000  00000000000000000000000000000000000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                ....:....10....:....20....:....30....:....40....:....50....:....60....:....70....:....80....:. ...90....:....100....:.  ...110....:....120....:... .130..   ..:....140..      ..:....150....:....160....:....170....:.. ..180....:..   ..190....:....200....:....210....:....220    ....:....230  ....:....240....:....250....:....260....:....270....:....280....:....290....:....300....:....310....:....320....:....330....:.     ...340...                                                                                                                                                                                                                                                                                                        

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found