QuickPhyre Alignment of query sequence to fold library protein d1o5ka_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60...          .:....70. ...:....80....:....90....:....100....:....110....:....120  ....:....130....:....140....:....150....:....160....:....170....:....180....:....190....:..  ..200....:....210....:....220  ....:....230....:....240....:....250....:....260....:....270....:         ....280....:.. ..290....:....300....:....310....         :...        .320....:...  .330....:....340....:....350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ---------------------------         ----        ----------  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ---------------------------         ----        ----------  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ---------------------------         ----        ----------  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ---------------------------         ----        ----------  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213212121431230000000000000000141236000000000000000232212124          21431000 1011201011120110212212210101110010100211121121111  21112252231212111211121110113212132325412111101111120221132112111111011112112  31132111111011012114111  4312223422331102013111111011013211322310212110221112321         131121112111 111111011121111011101111010         1122        5232231110  1013211221111111111322111110211211131231222122213111732444434431124244212132111000000000000273141121132112311321310000101111145111221232013111311231132331223511321121221245421232233223222321111111311111101011123212112110231111112233733442132123322211241171332412601071124211212212310212223332232334111212511211121011121111221112
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                              XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE----------ECCCCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC---------CCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCC---------CCCE--------EEEECCCHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLE----------FFPPRTAE-GAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC--GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGY--PKGHPEAGSFEADLKHLKEKVSA--GADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE---------VPQEIKDVIEPI-KDNDAAIRNYGIELAVSLCQELLASGL---------VPGL--------HFYTLNREMA--TTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                         +-+-++++ -++++++-++++-+-+++++-+----++-++-++--- +++++++++++  +++++++  +-+-+-++--++++++++++++-++++    +---+++++      -+++++-++--+-- ++-+--+  +-------++++ ++++++-+--  +    +-----++++++++++++++++-+--++++    +++--++-++  -+++         +++++++-++++ +++-++++++--++ ++++++++++++         --++         +-+++-+++  +++++++++++                                                                                                                                                                                                                                                                                                                             
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
d1o5ka_ Sequence---------------------------------------------------------------HMFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDER-EKLVSRTLEIVDGKIPVIVG--AGTNSTEKTLKLVKQAEKLGANGVLVV----TPYYNKPTQ------EGLYQHYKYISERT-DLGIVVYNVPGRTGVNVLPET-AARIAADLKNVVG----IKEANPDIDQIDRTVSLTKQARSDFMVWSG----NDDRTFYLLC--AGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKL-RPLMKALFVETNPIPVKAALNLMGFIENELRLP-LVPASEKTVELLRNVLKESGLL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1o5ka_ Predicted Secondary Structure---------------------------------------------------------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCCH------HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHH-HHHHHHCCCCEEE----EECCCCCHHHHHHHHHHHHCCCCCEEEECC----CHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1o5ka_ Known Secondary Structure------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                         1               1  11  1 1 111  1 1                                                                                                                                                                 1111   11                       1  11111                   1  11  1    2                     2               1  1 1                                                                                                                                                                                                                                                                                                                              
Consensus Function 000000000000000000000000000000000000000000000000000000000000000          30000000 0000000300330030303330030300000000000000000000000  00000000000000000000000000000000000000000000000000000000000000000000000000000  00000000000000000000000  0000000000000000000000000000000033330003300000000000000         300333330000 000000000000003003300300001         0000        1000000000  0000300303000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                ....:....10....:....20....:....30....:....40....:....50....:. ...60....:....70....:.  ...80....:....90....:....100...    .:....110..      ..:....120....:. ...130....:....140....:.. ..150....:....160    ....:....170....:....180....:....190    ....:....200  ....:....210....:....220....:....230....:....240 ....:....250....:....260....:....270... .:....280....:....290....:                                                                                                                                                                                                                                                                                                                            

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found