QuickPhyre Alignment of query sequence to fold library protein d2liva_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:                                        ....60....:....70....:....80....:....90....:....100....:....110....:....120....:      ....130...         .:....140....: ....150....:....160....:....170....:....180....:  ....190....:....200....:....210....:....220....:....230....:....240....:....250....:....260....:....270.. ..         :..  ..280....:. ...290....:....300....:....310....:....320....:....330....:...                                   .340....:....350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %-------------------------------------------------------                                        ----------------------------------------------------------------------      --------         ------------ ----------------------------------------  --------------------------------------------------------------------------------------- --         ---  --------- ----------------------------------------------------                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %-------------------------------------------------------                                        ----------------------------------------------------------------------      --------         ------------ ----------------------------------------  --------------------------------------------------------------------------------------- --         ---  --------- ----------------------------------------------------                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %-------------------------------------------------------                                        ----------------------------------------------------------------------      --------         ------------ ----------------------------------------  --------------------------------------------------------------------------------------- --         ---  --------- ----------------------------------------------------                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %-------------------------------------------------------                                        ----------------------------------------------------------------------      --------         ------------ ----------------------------------------  --------------------------------------------------------------------------------------- --         ---  --------- ----------------------------------------------------                                   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)2222132121214312300000000000000001412360000000000000002                                        3221212421431000101120101112011021221221010111001010021112112111121112      25223121         211121112111 0113212132325412111101111120221132112111  111011112112311321111110110121141114312223422331102013111111011013211322310212110221112 32         113  112111211 1111111011121111011101111010112252322311101013211221                                   111111111322111110211211131231222122213111732444434431124244212132111000000000000273141121132112311321310000101111145111221232013111311231132331223511321121221245421232233223222321111111311111101011123212112110231111112233733442132123322211241171332412601071124211212212310212223332232334111212511211121011121111221112
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                          XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC----------------------------------------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE------EEEECCCC---------CHHHHHHHHHHH-HHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHC-CC---------CCC--HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCC-----------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLES----------------------------------------GDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETI------LHMTCCRQ---------RLEEITGHLHKA-KQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSE--FGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLS-KL---------EVP--QEIKDVIEP-IKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM-----------------------------------WTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                                               +++   ++++---++-++++-+++++++++-+++++          -+-+--++-++++++-+++++--+      --++-+++         ++++-+++++-+ ++++-+++-++            ---++++++++++++++  -+++--++---++-+   +++++++++++   +-+++++++  ++--+++++++++++++++++++++-+ --+++++-++---+-+ ++         +-+  +++++++++ ++++++++--++-+ ++-++++-++++          +--+++++-++++++                                                                                                                                                                                                                                                                                                                                                                 
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
d2liva_ Sequence-------------------------------------------------------EDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNK---LQIAKYDDACDPKQAVAVANKVVNDGIKYV----------IGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIV------------HDKQQYGEGLARAVQDGLKKGNANVVFFDGITAG---EKDFSTLVARL---KKENIDFVY--YGGYHPEMGQILRQARAAGLKTQFMGP-EGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYA-ALQSLQAGLNQS----------DDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d2liva_ Predicted Secondary Structure-------------------------------------------------------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE---EEEEEEECCCCHHHHHHHHHHHHHCCCEEE----------EECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE------------ECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCC---CCCHHHHHHHH---HHCCCCEEE--EECCHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHC----------CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCEEECCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d2liva_ Known Secondary Structure------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                                                     3 3                          1           111                 1 1       1 1  12            2  22  2                              2                                                                                 222 22         2 22                   3  33   3     2   113 11  1                           11   1                                                                                                                                                                                                                                                                                                                                                                 
Consensus Function 0000000000000000000000000000000000000000000000000000000                                        0000001010000000000000000000000000030000000000033300000000000000000303      03030031         000100110010 0000000000000000000000000000100000000000  000000000000000000000000000000000000000000000000000000000000000000001110110000000001011 00         000  001001100 1000001000331033003000000000000000000000000000330003                                   000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                        ....:....10....:....20....:....30....:....40...   .:....50....:....60....:....70...          .:....80....:....90....:....100....:....110....:....120....:....130....:....140....            :....150....:....160....:....170....:...   .180....:....   190....:...  .200....:....210....:....220....: ....230....:....240....:....250....:....260....:....270....:....280.. ..:....290....          :....300....:....310....:....320....:....330....:....340....                                                                                                                                                                                                                                                                                                                             

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found