QuickPhyre Alignment of query sequence to fold library protein d1wa3a1

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60....:....70....:....80....:....90....:....100....:....110. ...:....120....:....130....:....140....:....150....:....160....:....170....:....180....:....190....:....200....:....210....:....220....:....230....:....240....:....250....:....260....:....270....:    ..     ..280....:.                                                         ...290....:....300....:....310....:....320....:....330....:....340....:....350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %--------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------    --     ---------                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %--------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------    --     ---------                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %--------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------    --     ---------                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %--------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------    --     ---------                                                         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213212121431230000000000000000141236000000000000000232212124214310001011201011120110212212210101110010100211 12112111121112252231212111211121110113212132325412111101111120221132112111111011112112311321111110110121141114312223422331102013111111011013211322310212110221112321    13     112111211                                                         1111111011121111011101111010112252322311101013211221111111111322111110211211131231222122213111732444434431124244212132111000000000000273141121132112311321310000101111145111221232013111311231132331223511321121221245421232233223222321111111311111101011123212112110231111112233733442132123322211241171332412601071124211212212310212223332232334111212511211121011121111221112
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                   XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHH-HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC----CC-----HHHHHHHHH---------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMM-IASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE----VP-----QEIKDVIEP---------------------------------------------------------IKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                                                                +-+++ +++++-++  +  ++-+++++-++++++-+-+++ ++-++            ----+++++++++++++++++-++          +-+- ---+-+++-++++++++++ +-++++    ++++++++++  +++++++   +++-++---++ +++    -+     +++++++++                                                                                                                                                                                                                                                                                                                                                                                                                                           
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
d1wa3a1 Sequence---------------------------------------------------------------------------------------------------------------KMEELF-KKHKIVAV--L--RANSVEEAKEKALAVFEGGVH-LIEIT------------FTVPDADTVIKELSFLKEKGAIIG----------AGTV-TSVEQCRKAVESGAEFIVS-PHLDEE----ISQFCKEKGV--FYMPGVM---TPTELVKAMKL-GHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1wa3a1 Predicted Secondary Structure---------------------------------------------------------------------------------------------------------------CCCHHH-HHCCCEEE--E--ECCCHHHHHHHHHHHHHCCCC-EEEEE------------CCCHHHHHHHHHHHHHCCCCEEEE----------CCCC-CCHHHHHHHHHHCCCEEEE-CCCCHH----HHHHHHHCCC--CEECCCC---CHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1wa3a1 Known Secondary Structure---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                                                                1   1    1 1 1                                                                                                  1 1                          1                   1 1                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Consensus Function 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 30003000030303000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003030000000000000000000000000030000000000000000000303    00     000000000                                                         0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                                                                ....:. ...10....  :  ....20....:....30....:. ...40.            ...:....50....:....60....:          .... 70....:....80....:... .90....    :....100....  :....110.   ...:....120.. ..:....130....:....140....:....150....:....160....:....170....:....180....:....190....:....200..                                                                                                                                                                                                                                                                                                                                                                                 

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found