BINF630/BIOL580/BINF401 Spring 2017

Homework 2.

Select one of the protein sequences from the list below (the first letter of the protein ID should be the same as the first letter of your last name or the closest to it). Predict secondary and three-dimensional structure for the selected sequence using an advanced secondary structure prediction algorithm and a homology modeling algorithm, respectively. Analyze the quality of your model using one of the structure validation or verification tools and identify structural classification of your model.

Selected protein sequence: K8G1J4
FASTA Sequence of the protein is extracted from: UniProtKB

Brief summary of protein
Protein's Submitted name: Peptidase
Organism: Xanthomonas axonopodis pv. malvacearum str. GSPB2388
FASTA Sequence:

>tr|K8G1J4|K8G1J4_9XANT Peptidase OS=Xanthomonas axonopodis pv. malvacearum str. GSPB2388 GN=WS7_05788 PE=4 SV=1 MHTILADSERRPAPSTVEAGQPPQDERLRVLLAVRMPALNAAADALLQLQPNTLPVAFTR AEFSERFAAGAGDLQAVADFAASYGLRIEHAHADSGSVILEGTVQQCEAAFQVSLRDYID GAMRYRGRTGPVSIPQALGGIVTAVLGLDARPQAQTLPSAPEASASLPPAIQPTAPADSR DGPIMQYTPPQLAQLYGFPEHDGHGQCIGIIVLGGGYARDQMTAYFAQLRVPMPTLVDVL LPGATNAVSRGNADADVEAQMDIQIAGAIAPGAKLVMYFAPNTDNGFLEAINAAIHDAEH SPGIIAISWGFTESQWTPQSRQAYDCAFRAAALMGITVCIAAGDDGASDGQPGLNVCFPA SSPFVLACGGTRLQVTADSANEQAWASGGGGESRFFARPAWQNNLRLTDAQHQSRHLRMR GVPDVAANADAQTGYYLSINGQPAVMGGTSAAAPLWAALLARIYGANRMQPHFMLPRLYG HPEAFRDIVAGDNAGFRAATGWDANTGLGVPDGARLAEALRHN

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