Vaisman LabDepartmentGMUHomeLaboratory for Structural Bioinformatics researchteachingpublicationssoftwarepeoplecontacts
line

Papers

Conference Presentations

Lectures

I.I. Vaisman, A. Tropsha, W. Zheng  Compositional Preferences in Quadruplets of Nearest Neighbor Residues in Protein Structures. DIMACS Workshop on Combinatorial Clustering and Multi-Domain Protein Structure Analysis, Rutgers University,  New Brunswick, NJ, 1998

I.I. Vaisman, A. Tropsha, W. Zheng  Tessellated Molecules: Computational Geometry of Chemical and Biological Structure. Second CGC Workshop on Computational Geometry, Duke University, Durham, NC, 1997

I.I.Vaisman, A.Tropsha, W.Zheng  Computational geometry of protein structure. Voronoi Workshop,  Arizona State University,  Tempe, AR, 1997

I.I.Vaisman, A.Tropsha, W.Zheng  Computational geometry of molecular structure. 212 ACS National Meeting, Orlando, FL, 1996

I.I.Vaisman Virtual laboratories in chemical research and education.212 ACS National Meeting, Orlando, FL, 1996

I.I.Vaisman, A.Tropsha, W.Zheng Computational geometry of molecular structure. 4th WATOC Congress, Jerusalem, Israel, 1996

I.I.Vaisman Virtual communities at interdisciplinary boundaries.210 ACS National Meeting, Chicago, IL, 1995

I.I.Vaisman  On-line chemistry: computer-mediated communication, research and education. XIth International Conference on Computers in Chemical Research and Education, Paris, France, 1995.

I.I.Vaisman Computer-mediated communication in science. AAAS-ABA Invitational Conference on Legal, Ethical, and Technological Aspects of Computer and Network Use and Abuse, Queenstown, MD, 1994

I.I.Vaisman Scientific information and computer networks. Scientific Computing & Automation Conference: The Summit for Scientific Computing, Washington, DC, 1993.



Posters

O. Shats, I.I. Vaisman, A. Rubinstein, and S. Sherman Sequence-Conformation-Structure Database (SECOST) for Amino Acid Residues in Proteins: New Release. Sixth Electronic Computational Chemistry Conference (ECCC6),  http://www.chemie.uni-regensburg.de/ECCC6,  1999

I.I.Vaisman, A.Tropsha, W.Zheng Computational geometry of molecular structureFrontiers in Chemistry: Molecular Basis of the Life Sciences, 37th IUPAC Congress, Berlin, Germany, 1999

I.I.Vaisman Protein Structure Comparison Using Computational Geometry Methods. Seventh International Conference on Intelligent Systems for Molecular Biology, Heidelberg, Germany, 1999

O.Shats, I.I.Vaisman, A.Shats, S.Sherman Conformational Database for Amino Acid Residues in Protein Structures. Fifth Electronic Computational Chemistry Conference (ECCC5), http://hackberry.chem.niu.edu/ECCC5, 1998

I.I.Vaisman, A.Tropsha, W.Zheng  Statistical geometry of four-residue clusters in protein structures. Sixth International Conference on Intelligent Systems for Molecular Biology,  Montreal, Canada, 1998

I.I.Vaisman, A.Tropsha, W.Zheng Statistical geometry of four-residue clusters in protein structuresSecond International Conference on Computational Molecular Biology - RECOMB'98, New York, NY, 1998

I.I.Vaisman Computational geometry of protein structurePharmaceutical Research and Manufacturers of America Foundation Annual Awardee Meeting, Washington, DC, 1998

I.I.Vaisman, A.Tropsha, W.Zheng Computational geometry of protein structureInternational Conference on Bioinformatics: Gene Discovery in silico, Atlanta, GA, 1997

I.I.Vaisman, A.Tropsha, W.Zheng  Computational geometry of protein structure.First International Conference on Computational Molecular Biology - RECOMB'97, Santa Fe, NM, 1997

A.Tropsha, I.I.Vaisman, S.J.Cho, W.Zheng A  new approach to protein fold recognition based on Delaunay tessellation of protein structure. 212 ACS National Meeting, Orlando, FL, 1996

I.I.Vaisman Virtual communities and network collaboration in chemistry. 4th WATOC Congress, Jerusalem, Israel, 1996

I.I.Vaisman, W.Zheng , R.K.Singh, A.Tropsha, Statistical geometry of molecular structure: Nonrandom Clustering of Amino Acid Residues. International Conference on Protein Folding and Design, Bethesda, MD, 1996

A.Tropsha, W.Zheng, I.I.Vaisman A new approach to sequence-structure threading based on Delaunay tessellation of protein structure International Conference on Protein Folding and Design, Bethesda, MD, 1996

I.I.Vaisman Molecular informatics and World Wide Web 210 ACS National Meeting, Chicago, IL, 1995

I.I.Vaisman, D.Hoffman, R.K.Singh, A.Tropsha Statistical Geometry of Protein Structure Intelligent Systems in Molecular Biology: ISMB-95, Cambridge, UK, 1995

I.I.Vaisman, D.Hoffman, R.K.Singh, A.Tropsha Statistical Geometry of Protein Structure: Patterns of Spatial Propensity of Amino Acid Residues. Proteins Gordon Conference, Tilton, NH, 1995.

I.I.Vaisman Scientific communication in chemistry in the Internet era. 208 ACS National Meeting, Washington, DC, 1994

I.I.Vaisman, F.K.Brown, A.Tropsha Differences in water structure around hydrophobic and hydrophilic groups of a peptide. 208 ACS National Meeting, Washington, DC, 1994

I.I.Vaisman, A.Tropsha Statistical geometry of water structure around solutes. Water and Aqueous Solutions - Gordon Research Conference, Plymouth, NH, 1994

I.I.Vaisman Flooding the Superhighway: Water science and computer networks. Water and Aqueous Solutions - Gordon Research Conference, Plymouth, NH, 1994

I.I.Vaisman On-line proteins: computer networks and molecular databases. Proteins Gordon Conference, Tilton, NH, 1993.

I.I.Vaisman, A.Tropsha Molecular simulation of tuftsin. Proteins Gordon Conference, Tilton, NH, 1993.

I.I.Vaisman, L.Perera, M.L.Berkowitz Mobility of stretched water. 206 ACS National Meeting, Chicago, IL, 1993, Abstracts, COMP-14.

F.K.Brown, P.Charifson, R.Unwalla, A.Tropsha, I.I.Vaisman The role of water in drug design. 205 ACS National Meeting, Denver, CO, 1993, Abstracts, COMP-6.

I.I.Vaisman, L.Perera, M.L.Berkowitz Mobility of stretched water. Water and Aqueous Solutions - Gordon Research Conference, Plymouth, NH, 1992

I.I.Vaisman, M.L.Berkowitz Local structural order and molecular associations in water-DMSO mixtures. Water and Aqueous Solutions - Gordon Research Conference, Plymouth, NH, 1992

I.I.Vaisman, M.L.Berkowitz Structural peculiarities in liquid DMSO and DMSO-water mixtures. CRYO'92 - 29th Annual Meeting of Society for Cryobiology, Ithaca, NY, 1992, Abstacts, 62.

Y.P.Puhovski, I.I.Vaisman, M.G.Kiselev, Y.M.Kessler Conformational analysis of a thymidine derivative in the gas phase and in a water-thymidine mixture. 3rd European Symposium on Organic Reactivity, G?teborg (Sweden), 1991, Abstracts, p.205.

I.I.Vaisman, Y.P.Puhovski, M.G.Kiselev, Y.M.Kessler Modelling of hexamethyl phosphoric triamide solvation in aqueous electrolyte: Molecular dynamics study . 10th IUPAC Conference on Physical Organic Chemistry, Haifa (Israel), 1990, Abstracts, p.215.

Y.P.Puhovski, I.I.Vaisman, M.G.Kiselev, Y.M.Kessler MD study of ionic mobility in aqueous electrolyte solutions. 4th Rostock Conference on Classical Liquids and Solutions, Rostock (Germany), 1990.

R.S.Kumeev, I.I.Vaisman, Y.M.Kessler, I.A.Lukyanchikova Ionic mobilities and organic solvent molecules microdynamics Second World Congress of Theoretical Organic Chemists, Toronto (Canada), 1990, Abstracts, p.CP-11.

Y.P.Puhovski, M.G.Kiselev, I.I.Vaisman, Y.M.Kessler Thermodynamics of Na+ and Cl- solvation in water-HMPT mixed solvent. VI National Conference on Thermodynamics of Organic Compounds, Minsk (USSR), 1990, Abstracts, p.112.

I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski, Y.M.Kessler Dynamics of water molecules in water-HMPT-ion system from MD experiments. II National Conference on Chemistry of Non-Aqueous Solutions, Kharkov (USSR), 1989, Abstracts, v.1, p.14.

I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski, Y.M.Kessler Solvation of the Na+ ion in binary solvent water-HMPT. 44 International Meeting on Physical Chemistry, Nancy (France), 1989, Abstracts, p.28.

Y.M.Kessler, A.N.Petrov, I.I.Vaisman, M.G.Kiselev Influence of ions on hydration of heterofunctional molecules. XIV Mendeleev Congress on General and Applied Chemistry, Tashkent (USSR), 1989, Proceedings, p.73.

I.I.Vaisman, Y.M.Kessler, M.G.Kiselev, Y.P.Puhovski Molecular dynamics simulation of water-HMPT solution: structure, dynamics and thermodynamics of hydration. 9th International Conference on Chemical Thermodynamics and Calorimetry, Beijing (China), 1989, Abstracts, p.C-38.

I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski, Y.M.Kessler The Na+ ion solvation in water-hexamethylphosphorictriamide solution: MD simulation. XX International Conference on Solution Chemistry, Jerusalem (Israel), 1989, Abstracts, p.92.

I.I.Vaisman, M.G.Kiselev, Y.P.Puhovski, Y.M.Kessler Solvation and mobility of Na+ and Cl- ions in water-HMPT mixture. 7th National Conference on Electrochemistry, Chernovtsy (USSR), 1988, Abstracts, v.1, p.242.

Y.M.Kessler, R.S.Kumeev, I.I.Vaisman, R.H.Bratishko Ionic mobilities at infinite dilution. XIX International Conference on Solution Chemistry, Lund (Sweden), 1988, Abstracts, p.188.

Y.M.Kessler, I.I.Vaisman Structural effects in the ionic mobility. National Conference on Acid-Base Equilibrium and Solvation, Kharkov (USSR), 1987, Abstracts, p.75.


Created in July, 1994.  Last update: October, 1999.