Supplementary Reading
A1a. Claude E. Shannon
A Mathematical Theory of Communication (original, corrected version)
A1b. Thomas Schneider
Information Theory Primer
A2. Inside the Cell
A3. The New Genetics
A4. The Chemistry of Health
A5. The Structures of Life
A6. Computing Life
A7. Geoffrey J. Barton
Protein Sequence Alignment and Database Scanning (pdf)
A8. RasMol and Chime
RasMol Tutorial
A9. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Nucleic Acids Res 1997 Sep 1;25(17):3389-402
A10. Molecular Biology Databases
A11. Narayanan A, Keedwell EC, Olsson B
Artificial Intelligence Techniques for Bioinformatics
A12. Geer RC, Sayers EW
Entrez: Making use of its power
A13. Madden T
The BLAST Sequence Analysis Tool
A14. BLAST tutorial
A15. Engelsen K, Kimble R
How to Use Biology Workbench
A16. Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP
Computational solutions to large-scale data management and analysis
Nat Rev Genet. 2010 Sep;11(9):647-57
A17. Gerstein MB et al.
What is a gene, post-ENCODE? History and updated definition
Genome Res. 2007 17: 669-681
A18. Luscombe NM, Greenbaum D, Gerstein MB
What is bioinformatics? A proposed definition and overview of the field.
Methods Inf Med. 2001;40(4):346-58.
A19. Bastow R, Leonelli S.
Sustainable digital infrastructure.
EMBO Rep. 2010;11(10):730-4.
A20. Fayyad U, Piatetsky-Shapiro G, Smyth P.
The KDD Process for Extracting Useful Knowledge from Volumes of Data
A21. Domingos P.
A Few Useful Things to Know About Machine Learning
Introducing the BLAST homepage and form elements/functions
The Jalview Tutorial
Jalview Practical Guide



Jeremy Ramsden
Bioinformatics: An Introduction (Fourth Edition)
Free ebook from GMU library
Andrzej Polanski and Marek Kimmel
Free ebook from GMU library
Charlie Hodgman, Andrew French, and David Westhead
Free ebook from GMU library
Daniel J. Rigden (Editor)
From Protein Structure to Function with Bioinformatics
Free ebook from GMU library
Huzefa Rangwala and George Karypis (Editors)
Introduction to Protein Structure Prediction: Methods and Algorithms
Free ebook from GMU library
Philip E. Bourne and Helge Weissig (Editors)
Structural Bioinformatics
Free ebook from GMU library
Amit Kessel and Nir Ben-Tal
Introduction to Proteins: Structure, Function, and Motion
Free ebook from GMU library
B8 Bruce Alberts, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, and Peter Walter
The Shape and Structure of Proteins
Free ebook from NLM
B9 Eugene V Koonin and Michael Y Galperin
Principles and Methods of Sequence Analysis
Free ebook from NLM
B10 Thomas Dandekar, Meik Kunz
Bioinformatics - An Introductory Textbook
Free ebook from GMU library
B11 Shili Lin, Denise Scholtens, Sujay Datta
Bioinformatics Methods: From Omics to Next Generation Sequencing
Free ebook from GMU library
B12 Basant Tiwary
Bioinformatics and Computational Biology: A Primer for Biologists
Free ebook from GMU library
B13 Hamid Ismail
Bioinformatics: A Practical Guide to NCBI Databases and Sequence Alignments
Free ebook from GMU library
B14 Stefano Allesina and Madlen Wilmes
Computing Skills for Biologists: A Toolbox
Free ebook from GMU library