GeneOrder2.0

COMPARE GENE ORDER BETWEEN TWO SMALL GENOMES

(Please do not use genomes greater than ~250kb)

(The result will be displayed in 1-30 minutes. Most small genomes, approximately 30,000 bases, will take 1-5 minutes. The amount of time required for running is dependent on the genome size and servers' availability. It will take more time if more than one user is logged on. Thank you for your patience)

 
   Reference Sequence   
   Query Sequence   
   Database   
   Enter threshold BLASTP high score ranges in the boxes below. Each gene from the Query sequence is compared to all of the genes from the Reference database using BLASTP. Gene pairs which match with a BLASTP high score above the threshold values that you enter below are reported. You can specify up to three ranges and your results will be color coded based on the BLASTP scores you enter below.   
   Highest:       High:       Low:     
        
There are two display formats: graphical and tabular. Toggle between the two on the output page.

README

GeneOrder2.0 has been developed by Nikhat Zafar, Raja Mazumder and Donald Seto.
This software is licensed from GMU and must not be modified without prior permission.
Copyright ©2001 George Mason University


References:

1. Mazumder R, Kolaskar A, and Seto D. GeneOrder: comparing the order of genes in small genomes.Bioinformatics. 2001 Feb;17(2):162-6.
2. Zafar N, Mazumder R, and Seto D. Comparisons of gene colinearity in genomes using GeneOrder2.0. Trends Biochem Sci. 2001 Aug;26(8):514-6.

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