Instructions for using Custom Data 1) First, a reference genome should be used. An accession number for the reference genome should be obtained. 2) The data should be in the format shown below. If no accession numbers are available for the custom data, dummy values/identifiers can be used as shown in the example below: >gp|32kprecursor%1|32kprecursor|[ovine adenovirus 7] sequence of protein >gp|9.7kd%2|9.7kd|[ovine adenovirus 7] sequence of protein There is one important thing to keep in mind: You must put in a number after the % symbol in the data above. Notice that the first entry has a 1 after the % and the second entry has a 2. So your third entry will have a 3 after the % and so on. >gp|NC_004037|NC_004037%1|21450892|32k precursor[ovine adenovirus 7] MYVTNNTALAGGAYRKRKKKFQRPKPRKRARKSKKPPKSENTYVQRFWKNPPRNYILKEPTKPISSYARWIPPEIVDVNNITVNIPNTITASRLPKTEFQETEVFKDARDQWYFPIRPSDGEHDTDVKVKKKWSLDTVLQFLQSSPKHIRQLLLTSLFGSLLGLILDTLFGGPWNLTSRLLRLIISVVPGGRILLTALDGLGYFLGNSANPIHLIENPMMQAFGNSIQKQISPRLAEDIIKAADEQIGGGFMRTIASILSAAASAGTHFTMALPAIPIAAVRPFMR >gp|NC_004037|NC_004037%2|21450897|LH1 (9.7kd)[ovine adenovirus 7] MEKKLLKPSINHIICQWNHESDSAGFFLFDTDNLYYYVLDQVSWICLRDITLHCDRMWLAVCFCLCKSKFDVHNILAGVHVM >gp|NC_004037|NC_004037%3|21450893|LH2 (E1B small t protein?) 14.7kd[ovine adenovirus 7] MEIGMTPAFTERNLYCVLLDFNLRWYQQIFNPIWIKPNLWAFSDFLKKMAFIYASDLALLNSYIPGNVCNKLDIIKKDLPEDFTVSMFCVLVCWLASFCKGSNLAETRQNCHAVSKFLAQLSKLIKP >gp|NC_004037|NC_004037%4|21450894|LH3 (E1B large T protein?) 42.8kd[ovine adenovirus 7] MTSAEFSVEFPYVSKPIVPWPASASSNNSSSQNIDFPVLKPDQDPIAFFQTNNTAYLQPGATYYWKCIELSKPIHIYGQGATVQLVGPGPVFVFNSESVIPEDFYVVFENINFIEDEFPIRSGQLSLGLTTHSAVWFINVWKTSIVNCNFKNFRGAALWYSDNRNFWNARKWNQQHLVSNCRFNGCRIGISNTGSSEYSIASQNQFYDCQICFNVTGGNWSRNNNVIVNCRCAYLHVGDNMWYEGHSENNNPAKGTFCNNIINHADNGGNVWPTQFKLTDGSTIQLASFYFDDNQEIPPCYSGNFHWFGDVNIVNFSTTKIDKWCITGCNFYGNTHAANDAGQVQVAEAVKDKVFIIGCSGNNVTMKNIVEGNMTPKIGTIK >gp|NC_004037|NC_004037%5|21450895|IVa2 (37.5kd)[ovine adenovirus 7] MYHGQLMTDLHNIAVNYQKTVNEAHNLLKDGCIPSLNCGLQPFIVTVYGPTGSGKSQFIRNIISGKLIDPIPETIFFITPEKGTVPLEEKIAWKAQCVEGNYDAFSNPLTKTLNPKFIQLAFKDAISDTNLNIDNPDNIFCRAASEGSICIIIDECMNQLGSCHSISSFFHALPSKIFNRFAKCNGYTVVVVLHNMNPRHDRGNIKDLKIQSKCHVISPQLDSSQINRFIKNYSFGFPSALIPVLKDIVDHARVNSKYSWLIYNNVPITESFRWSYYSPSDQVKPIFMNLQSLFYQACMEIRRVFRKRTYTQNQYVKRLNVNPFCFE >gp|NC_004037|NC_004037%6|21450896|DNA polymerase[ovine adenovirus 7] MASKTIIKQRTTTYITGIYEDTYIKIIYYKNFEKSFYNYFAIQGLKLNSFKKVENVLDVLKLCDSNTPVSLKIWKFNKRFFKMTEEILNGNLLPIELLILKGEIYLIKTVKQQNKCEFCGTIYSNIHNCSSRRRDFYYHNIHHETKLWWEKIKFNPVGAIKAKRLFIVYDIETYTYHSLYGKQLTPYLLVFKLIGCKSLIKIASKIATDIGYEVNRECFVMLNKKEDEIGIAFKKFRTELQISVAKKYWSTFCENHGLESNLSYEDIMVLNKEKKLKQCEPRYIELYVVGHNICGFDEIILASHVLEGIDSEELSMFKLTRSFMPRAGKLLFNDITLSLPNPCFKKPSHTTYERWKNGIINFEDMKWQGIKFMVRDTFLLTHSSLRDAATAYQLSVSKGYCPYRAINDFFMLGEYEKENNGYPVQKYWNSFEEYLQNKPKHNQKYNLLEEAKEYCIDDVIVTAQLVEKLIEGYQEFCTTSLKLECSFNIFQRPTISSNTQALFKQIFYNEEDHPSEFLRNLEAPSEKMYDFVRMSLRGGRCYPSFLGIFEEAIYVYDICGMYASALTHPLPYGKTLNAFEANAQIDYFQELLQRKEKIDYFDNSIKPMIVVADCEPPSLDYLDVLPPLCSKKSGKLCWSNETLINEVLTSIDLITLHNRGWKCKIIKSSEMYAVWSDWKPLCQKYVKVNIMAKEKASKSNNKIQRSISKLLSNALYGSFATRIDKKKVVFAENIEEKDKKRLENGSAEITSYTTVISKSLPKRSFEWNQYFSNLPEMPPKDSKDTNENFNFPLFIGNQDHVTFKPITFLSADCNDLILTTIEDKEEWIKNNRYPTQIASFVLAWTRAFMSEWAEILYGEDMGKPYIEREIKSIYGDTDSLFLTEKGHQLMLSKGLHRLKKYNSNLIFDEKHPCLTWLVECETVCNRCGAEAFSSETCILAPKLYALKDITCKNCKFIGEGKLRAKGHAKNCLNYEILKHCFTDYNLLEQPQKEFQTSRKSLKKTLQTASGTDVPFTVVEKQLTRILRPWKDQTMRKGIQWKKGYLLYPYDKRHPNPRPQEPLTENPFWENF >gp|NC_004037|NC_004037%7|21450898|Terminal Protein[ovine adenovirus 7] MTARQIHQWQQLTGQSQHTLRYLRLTLDLNNRSIARSRTIHERGIKWANRFFNYPVTQLLDLRPRGPVTSQPPFEGEPPPNLLIGYFYVARVLNQYLFDQRTYSNISYKLYLSPISFERRMTWQILTDCSYSINTGSYMRAIQNVENFSQTISQIQNAVLMDRILGSLQLADMQGFGSAISAQNQNRSFQQHYQPFSQAFMVLNLQERDTYLIKLICKIKKALCKFLILSNMHNSECILDLPFSEFWIELFIDEFSQLEIPEAENRINLKDLATVLTLGKGGMHGGALTLRSGTRVGLPFRLRPRENYRAITEIMRRSRGDVIRRFIDRLPVNRRQRVRNVEETSSSPLTVPEIEDEGFSDREPSSSDLSREEFNDEVIASIVDLIQNLEEELTPEARRSNFFNYGSEFFQLLIRFYNENRLTDDFIQKWLVYFFILEHVASTLYYLYLNLVQNRLAARNIGIQFVQIILRGRNENGEDIFTRVWFNRETQAFRQLYSRITRDFLGIIEANERSYSFSTPEERDQLLQDIDFVEDSGSIEEVINQVNTDFSDLDSVEIAFRIKLSGIVGYSTNEVVLRSFERVREAALNRWLQRQ >gp|NC_004037|NC_004037%8|21450899|52/55k[ovine adenovirus 7] MHPILQNLRSSLETPDLSSNSPGTSNKNEKDEFEPAVGISSKPSDEFNMRRSQRDDNLPKSQIPVVDILHDKNPKMAEERDLMYKSSACIKLDDSKQLKTDMFRPDFAGTSPAQRHIEAAELKRNGSYTRSLEQWTHDSFISHVKQLLSRPFISLGITYLDDFLQTYLDHTESSSLNFQLFTLINHCSENTLKRILKHISKKNEKNQYVNQWLIDLITCIYLIIRDEQNVTEQVNALLVTSNHLALHFAKKATGGFYPTADKLAKTHIFFKRIILGILSLAESIGCYTVNPYCKNPLKKSKVEVEPSDEMYMFSLKGALEHPDSDEDEDSGLQNE >gp|NC_004037|NC_004037%9|21450919|pIIIa[ovine adenovirus 7] MIANLLKELVALGAIRSDEVGPLYSDLLIRVHKYNSLNVQSNLQTLTGDIKSLQSDIIRSSDIPNLSNQVVLNTFLNSLPSTVTFGQHNYEAFKQTLRLFVNETPNITVFRSGNDTLIQVNITGIHTINLNDAFKNLKNFWGIVLTGEFIPGDITSRLTANTRVLLYFLAPFTNDNTFTPDTFLALLMKLYRLTVSSALDFEEETEAEVENVAQQIGSTSADFTKTLGYLLKNKEESFSPPKSLSPRQLGILRFIQKSLVDKIDRNNEDPWDALETLSYSFSPSFYEANGPFIRRLITYMEFALRNSPTYFREIYSNKYWIPPNSFWTQNYADFFSEKKEKQNFETFEPRELPLQISEEEAVPHTEDFQSAISPSMGQTSLPAPSVSEYSSVPRSAFYPLRERIQESISKAVIPPLTGYVGKQIGETIFPGSGDLVAPAASLVAAQLVDSRFNNRRQRLKDAARKRHRYVREMHNISDKESNASNDTVISPLIGHGSRTENRFEYLRPKGGNYLY >gp|NC_004037|NC_004037%10|21450900|III (penton)[ovine adenovirus 7] MQKFVPPPRILAPTEGRNSITYTPLAPLQDTTKVFFIDNKSSDIESLNFTNNHSNFFTNIIQNADLAADEAATQDIKLDERSRWGGELKTFIKTNCPNVSEFFNSNSFLARLMVDKTDPEHPKYEWVQITIPEGNYTGSELIDQLNNGILNNYLEVGRQKGVEIEDIGVKFDTRDFSLGYDPETGLITPGKYTYKAFHPDIILLPECGVDFTYSRINNMLGIRKRFPYTKGFQILYSDLTKGNISPLLNLNNYPHSIEPVMQDENGVSYNVEKISDNPPRWQTKYRSWTLSYKNNGGAKALTVLTVPDITGGLGQIYWSMPDTFKAPITFTNNTTKPETLPIVGLHMFPLKAGLVHNINAVYSQLLEQITNTTQVFNRFPKNAILMQPPYSTVTWISENVPFVADHGIQPLKNSLTGVQRVTITDDRRRSCPYIQKSLATVVPKVLSSATLQ >gp|NC_004037|NC_004037%11|21450901|pVII[ovine adenovirus 7] MSILVSPSDNTGWGIGTSSMRATGLKFSKKQPVRVRPYYRAQWGQLNARTSLEKLKTKLKYYEKLYRDRLKRKTVVPKKKRSPTSPADRLKKYLKAVSQIKAFNRARRAAQ >gp|NC_004037|NC_004037%12|21450902|pX[ovine adenovirus 7] MKVVHVLKSPHRRRHTRRYKKLKKINLSPYILPKELQGGFLPALIPIIAAAISAAPAIAGTVIAAKNANRS >gp|NC_004037|NC_004037%13|21450903|pVI[ovine adenovirus 7] MAFSRLAPHCGLTPVYGHTVGICDMRGGFSWSSLGNSFTSGLRNIGSFISNTAQKIGQSQGFQQAKQGLLQSNVLENAGQLAGQTLNTLVDIGRLKVEKDLEKLKQKVIGNDQQITQEQLAQLIASLKPKDEMFVKQSEKIVEPMRPEIKSSQMPVEMSFYDSVSDEPIIKTKEVSPPSFSSESSHSYSHPRKRKRVSGWGAFLDNMTGDGVNFNTRRYCY >gp|NC_004037|NC_004037%14|21450904|hexon[ovine adenovirus 7] MEPQREFFHIAGRNAREYLSENLVQFISATQSFFNLGEKFRDPFVAPSTGVTTDRSQKLQLRIVPIQTEDNENFYKTRFTLNVGDNRVADLGSAYFDIEGVIDRGPTFKPYGGTAYNPLAPKSAFPNAAFMDTDEATTIYIAQLPNAYNAQNKGVEEAIRVEANTTTPNPQSGEYATYDSAKFNPETTGASGRLLGINSLGDLFPAYGSYCRPQSADGNISTAPITKVYLNTTATDDRVSGVTAVDTATRLHPDAHYIEYTDEAKATAIGNRPNYIGFRDNFIGLMFYNNGSNAGTFSSQTQQLNVVLDLNDRNSELSYQYLIADLTDRYRYFALWNQAVDSYDQYVRILHNEGYEEAPPALSFPSQGIQNYFMPTAAGNAMTVDTGRNTAAKTDNTKAFIGYGNMPSLEMNLTANLQRTFLWSNVAMYLPDRLKTTPPNINLPDDTNSYGYINGRVPLANIIDTWTNIGARWSLDVMDTVNPFNHHRNSGLKYRSQLLGNGRYCRFHIQVPQKFFPIKNLLLLPGTYNYEWYFRKDPNMVFQSTLGNDLRADGATITYTNINLYVSFFPMNYETVSELELMLRNATNDQNFADYLGAVTNLYQIPANTNTVVVNVPDRSWGAFRGWSFNRIKASETPMIGATKDPNFTYSGSIPLLDGTFYLTHTFQRVSIQWDSSVPWPGDDRLLIPNWFEIKRDPNMDAEGYTMSQSTITKDFYLVQMAANYNQAYQGYKLPVHSKYYGFLENFQPMSRQVPIYGNGTYDLYTAYITNQRTMQIWNNSGLESKTSNPPMLSNTGHLYVANWPYPLIGPNAIENQQTERKFLCDKYMWQIPFSSNFLNMGNLTDLGQSVLYTNSSHSLNMVFTVDSMPETTYLMLLFGVFDQVVINQPTRSGISVAYLRLPFSAGSAAT >gp|NC_004037|NC_004037%15|21450905|23k protease[ovine adenovirus 7] MSGTSESELKNLISSLHLNNGFLGIFDCRFPGFLQKSKIQTAIINTGPREQGGIHWITLALEPISYKLFIFDPLGWKDTQLIKFYNFSLNSLIKRSALNNSDRCITVERNTQSVQCTCAGSCGLFCIFFLYCFHFYKQNVFKSWLFQKLNGSTPSLIPCEPHLLHENQTFLYDFLNAKSVYFRKNYRTFIENTKTGLIKTH >gp|NC_004037|NC_004037%16|21450906|DNA Binding Protein[ovine adenovirus 7] MSSKKVTKSIKKRKSTTEEFQNKVQAALEILAKFGECVKVDTSQMKFHPEEGDCEKLFAQYMKKMKIINLTYSSSKSMATVGGRMLYSAICKQIDLIPNFNASGCYLWYHDWEEDRPRCFHGDFMFKRVNEIEMPPTSEAGVQALKEGRGVLSNGRMNKQVVKIVQEHYVLCAEDAHQRFGQCSPRSCGLNFSDEKKALLAMQNAIETTKAVFPKAKVGNMLFILGQCECNYGGKQTIGKQLPKITPFSISGVEGIDVQDVNRVQAAAVTFPAVFVFQCCNYQYNLRRNNGKFCEMKISLPDMLQCLTLVRKFWNECMGNNIPIQFSQFKWNQSFQVKNTMLPNIEEDSDMNPFGTIEEPTPSKKKKTILESSSEEEDEDED >gp|NC_004037|NC_004037%17|21450916|Hexon Assembly Protein[ovine adenovirus 7] MAEKNMGESEKGLNEEEFNSILSKHLERQIKICKALTSKLSNWNIGTLLENLLFCPDERQSSGDPDPKLNFYPPFLIPECLALHYPFFLTTPIPLSCKANKIGTNTYRKWMNNQVLDLQIPSLENCKWDDSLGNVDLIEELKENQKLVLVKQDHERNIWFKSKCKQLQSFSYPSLSLPPVLQQVLIESLIGISQDPNNFDKNYEPAITLEKLQHVNCDQDLKQVQQKVSSAATYGILLKCIQTLFSDKLFIQNCQESLHYTFNHGYVKLLQFLTNVSLSEFVTFHGLTHRNRLNNPQQHTQLATEDKIDYIIDTVYLFLVFTWQTAMDIWNQTLDDKTINIIKEELNQNFEKIVKAESVDEVSEILKSIIFPELMLRAFCSNLPDFINQSQISNFRNFICIKSGIPQSICPLLPSDLIPLTFLESHPILWSHVMLLNLASFLVNQGNYLHEPEKPLNISSVYCNCNLCSPQRMPCYNSSLMQEILTIDKFEFTNSDKTKQLKLTLQTFANAYLNKFNSAEFYHDQVLFYKNCKSKFSNQLTACVIKDEKLLAKIAEIQITREKELLKRGKGIYLDPETGEILNNGEAISSSENFQRQRTSYALPSNEGERAGWEADERRRRRRSE >gp|NC_004037|NC_004037%18|21450920|33k[ovine adenovirus 7] MEKPYHPLKTSKGKELAMLYHQMKESELDGKPMSEEDEGEVSEDETETTIPKKMKFTKNSSVQSYQVHLPLKHEIAEILEKIRLESKKYPGKVYQIRNRTPASITKRYLYERDLKKLFQYLEDAKKLYAKYQS >gp|NC_004037|NC_004037%19|21450917|pVIII[ovine adenovirus 7] MAQPVTPYVWKYQPETGYTAGAHQNYNTVINWLHANPQMFARIQHINTARNVMDKFRSDLTRDDIAVNINNWPAEDLMQPPNFPYIPATSKSASTINDWLATTQGIQLSGTSELNGWGSNRLTSYPDIPPILKYERPGQQLQGQGLFKQENIHLFYESPRLPRSGGLTPQQFVKEFPPVVYNNPFSESMSVFPKEFSPLFNPSESLKKTSSQTLQYK >gp|NC_004037|NC_004037%20|21462025|U exon[ovine adenovirus 7] MTQVYFNSGLLLVSDILIPTFKWIKISSKNDLKLENYGSLIYFYGDENKRDALV >gp|NC_004037|NC_004037%21|21450918|Fiber[ovine adenovirus 7] MKRARWDPVYPFSEERLVPLPPFIEAGKGLKSEGLILSLNFTDPITINQTGFLTVKLGDGIFINGEGGLSSTAPKVKVPLTVSDETLQLLLSNSLTTESDSLALKQPQLPLKINDEGSLVLNLNTPLNLQNERLSLNVSNPLKIAADSLTINLKEPLGLQNESLGLNLSDPMNITPEGNLGIKLKNPMKVEESSLALNYKNPLAISNDALSINIANPLTVNTSGSLGISYSTPLRISNNALSLFIGKPLGLGTDGSLTVNLTRPLVCRQNTLAINYSAPLVSLQDNLTLSYAQPLTVSDNSLRLSLNSPLNTNSDGKLSVNYSNPLVVTDSNLTLSVKKPVMINNTGNVDLSFTAPIKLNDAEQLTLETTEPLEVADNALKLKLGKGLTVSNNALTLNLGNGLTFQQGLLQIKTNSSLGFNASGELSTATKQGTITVNFLSTTPIAFGWQIIPTTVAFIYILSGTQFTPQSPVTSLGFQPPQDFLDFFVLSPFVTSVTQIVGNDVKVIGLTISKNQSTITMKFTSPLAENVPVSMFTAHQFRQ >gp|NC_004037|NC_004037%22|21450907|E4.3 (30.8kd)[ovine adenovirus 7] MNSIMCCEGIHHLFYCDIPFVSFKVLESYINVVIFRLLKLYLCDLPCQQNQFHCHCLQPNSLQCQSLKQTLMLILKKVHVRVPVFLPWTNCCTNVLCYSFDDFTVLITRLWNALPLEEEISKIVTDYNRYNCCPMKVLFVFKSPEVQDCKNLLDTVHLKMNMVDLRGFHLPPYDYAYWKSYASIDSNDQPCLLRFVNYRGTLCQERYVKRLLFNKEFLKYSLSELMCCKHTNWYIFS >gp|NC_004037|NC_004037%23|21450908|E4.2 (25.6kd)[ovine adenovirus 7] MDKQIKVVACEKPSVPSHGLEIFTCVGRGRLGSAIRVYNLKKILTPFIYNQFFCYFPISQKADSFCKRADMAYKFYYHCHCNSPGSLQCLAAKSVLLSCFNHMPVTLFSERNVKTVPVCCNTWICCPLMFLGASQMHKTHFYFLFSGVMEDDFSSKWYSYQTVKRITFSETCELISIKCKCSDTLQQCISRFEKRFNFLRMLYCCSLIYRGLSEPSLDVA >gp|NC_004037|NC_004037%24|21450909|E4.1 (17.1kd)[ovine adenovirus 7] MNQHGRMLYPNSELLSFLSPLNRHQYQVYCIVSSRYLNYWARGPFRMAFRFNGDKTVYVLAQKDLFPEFDALDYLKWANFENMGTGFFEVDWDNLVGVLNDRESLIAEVVFVTSNVQDETWNFFRYYWENYFSSFPIKPDWQ >gp|NC_004037|NC_004037%25|21450910|RH6 (20.5kd)[ovine adenovirus 7] MALIFCFLLYLLQVMDLRSLLPDELWIEIFCYLTNKDIAKFVMCYNNMIELVKSSKFLCLYIKRFANIDCKLLQKFIVKSHLRFHAMLSVPSFWCDVLYYLPSGHCIACLTHPYLLLYSPFKCKCYCKDHRDLWQKYKSVILWSRKKYRRKFDAWPVCNAVVRKNSIKKCL >gp|NC_004037|NC_004037%26|21450911|RH5 (22.6kd)[ovine adenovirus 7] MDLKQLKQALLEHTKSCNKIGCDLASAEKITFTVHKNAFLHCLTLKFFIVHHAGKMYFKKSFCCFLKCRCPDEFSLSCLKKLALLICEAELKMHYSKLQTVIHENESYSKALLAHHDPFAVECPSLQCMMIGIWKLLVSLQILQKHFCVLREEPLNGLHFSGGAKCRIQLKQFLRGECSCMHPFSEVCFGGLLTKFCK >gp|NC_004037|NC_004037%27|21450912|RH4 (16.6kd)[ovine adenovirus 7] MKIFLKLTSKDIASFVFAFPQFITVIKDSYFIQLHLKRFEKIKCNAVLNDIRLSRRIGKYTPLPVACNWCCKTLLPSGHCVASLVNPHLLLYSPYHSLCFCVDHRSLWVDLEDVVLWSAVSVANLNNNWNWPECGSGVYKKKKL >gp|NC_004037|NC_004037%28|21450913|RH3 (5.7kd)[ovine adenovirus 7] MSELWEQFKKHDTECSEFFCVSRWITGVRVFYFWVCYFFFSLFTR >gp|NC_004037|NC_004037%29|21450914|RH2 (20.9kd)[ovine adenovirus 7] MLSVLPVEIWTMIFLYLSSRDIAAFILCFPELQTVILKKYFRKHFLKRFARIECCSVLNRLREECVRYNFPLLQLWSGWCQTKHFLHSGHCVACLTHPYLLLYSPFRSGCNCVDHRNLWYNLQDVVLWTCSSWQDLSPGWRWPECGVPVRAVKSVKKTLRLCYKNWVFAVLKKFLA >gp|NC_004037|NC_004037%30|21450915|RH1 (12.9kd)[ovine adenovirus 7] MIAFLPLEIWFEIFLYLPIADLVVFASVFREFLPLLYSTAFRRRYFLSHRAKFPGLSSSPSVSYCRYCFGVDCPTCWFDPFILFNFAPAEIGCRCSAHLYLYYTVKFYF