Department of Bioinformatics and Computational Biology  George Mason University

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Publications in 2011


Note: Faculty authors are listed in bold font. Student authors are listed in italics.
For previous year's publications, click here.

Akula, N., Baranova, A., Seto, D., Solka, J., Nalls, M.A., Singleton, A., Ferrucci, L., Tanaka, T., Bandinelli, S., Cho, Y.S., Kim, Y.J., Lee, J-Y., Han, B-G. and F.J. McMahon. (2011). A network-based approach to prioritize results from genome-wide association studies. PLoS One 6(9): e24220.

Dehghan, S., Seto, J., Hudson, N.R., Robinson, C.M., Jones, M.S., Dyer, D.W., Chodosh, J. and D. Seto. (2011). Genome Announcement: Complete genome sequence of human adenovirus prototype 17. J Virol. 85: 11540-11541. [Epub 10/07/11].

Liu, E.B., Ferreyra, L., Fischer, S.L., Pavan, J.V., Nates, S.V., Hudson, N.R., Tirado, D., Dyer, D.W., Chodosh, J., Seto, D. and M.S. Jones. (2011). Genetic analysis of a novel human adenovirus with a serologically unique hexon and a recombinant fiber gene. PLoS One 6(9): e24491.

Mahadevan, P. and D. Seto. (2011). In silico bioinformatic tools for determining core genes from sets of genomes. Drug Development Research 72: 147-152. [Epub 12/16/10]. (Review).

Masso M. and Vaisman I.I. Modeling Cell Proliferation Activity of Human Interleukin-3 Upon Single Residue Replacements, Proc BIOSTEC BIOINFORMATICS (2011) 93-101.

Masso M. and Vaisman I.I. A Structure-Based Computational Mutagenesis Elucidates the Spectrum of Stability-Activity Relationships in Proteins, Proc. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (2011) 3225-3228.

Masso M. and Vaisman I.I. Structure-Based Prediction of Protein Activity Changes: Assessing the Impact of Single Residue Replacements, Proc. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (2011) 3221-3224.

Masso M. Sequence-Based Prediction of HIV-1 Coreceptor Usage: Utility of n-Grams for Representing gp120 V3 Loops, Proc. ACM Conference on Bioinformatics, Computational Biology, and Biomedicine (2011) 309-314.

Ravich V., Masso M., and Vaisman I.I. A Combined Sequence-Structure Approach for Predicting Resistance to the Non-nucleoside HIV-1 Reverse Transcriptase Inhibitor Nevirapine, Biophys Chem 153 (2011) 168-172.

Robinson, C.M., Gurdeep, S., Henquell, C., Walsh, M.P., Peigue-Lafeuille, H., Seto, D., Jones, M.S., Dyer, D.W. and J. Chodosh. (2011). Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology 409: 141-147. [Epub 11/05/10].

Robinson, C.M., Seto, D., Jones, M.S., Dyer, D.W. and J. Chodosh. (2011). Molecular evolution of human species D adenoviruses. Infect. Genet. Evol. 11:1208-17. [ePub 05/05/11]. (Invited review).

Robinson, C.M., Gurdeep, S., Henquell, C., Walsh, M.P., Peigue-Lafeuille, H., Seto, D., Jones, M.S., Dyer, D.W. and J. Chodosh. (2011). Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology 409: 141-147. [Epub 11/05/10].

Seto, D., Chodosh, J., Brister, J.R., Jones, M.S. and members of the Adenovirus Research Community. (2011). Using the whole genome sequence to characterize and name human adenoviruses. J Virol. 85: 5701-2. [Epub 03/30/11]. (Editorial).

Walsh, M.P., Seto, J., Liu, E.B., Dehghan, S., Hudson, N.R., Lukashev, A.N., Ivanova, O., Chodosh, J., Dyer, D., Jones, M.S. and D. Seto. (2011). Computational analysis of two species C human adenoviruses provides evidence of a novel virus. J Clin. Microbiol. 49: 3482-3490-993. [Epub 08/17/11].



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