BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= UNKNOWN_SEQUENCE (656 letters) Database: pdb_polypeptide 103,242 sequences; 24,477,413 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 1V93:1:A|pdbid|entity|chain(s)|sequence 199 7e-51 3APY:1:A,B,C,D,E,F,G,H|pdbid|entity|chain(s)|sequence 199 8e-51 3APT:1:A,B|pdbid|entity|chain(s)|sequence 199 8e-51 3FST:1:A,C,E|pdbid|entity|chain(s)|sequence 154 3e-37 3FSU:1:A,C,E|pdbid|entity|chain(s)|sequence 153 6e-37 1B5T:1:A,B,C|pdbid|entity|chain(s)|sequence 152 6e-37 1ZRQ:1:A,B,C|pdbid|entity|chain(s)|sequence 152 7e-37 1ZPT:1:A,B,C|pdbid|entity|chain(s)|sequence 152 7e-37 1ZP3:1:A,B,C|pdbid|entity|chain(s)|sequence 152 7e-37 1ZP4:1:A,B,C|pdbid|entity|chain(s)|sequence 151 2e-36 2FMO:1:A,B,C|pdbid|entity|chain(s)|sequence 151 2e-36 2FMN:1:A,B,C|pdbid|entity|chain(s)|sequence 151 2e-36 >1V93:1:A|pdbid|entity|chain(s)|sequence Length = 296 Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + + Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176 GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 +LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF + Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+ Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248 Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+ Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289 >3APY:1:A,B,C,D,E,F,G,H|pdbid|entity|chain(s)|sequence Length = 310 Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + + Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176 GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 +LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF + Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+ Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248 Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+ Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289 >3APT:1:A,B|pdbid|entity|chain(s)|sequence Length = 310 Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/282 (39%), Positives = 159/282 (56%), Gaps = 8/282 (2%) Query: 59 WFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVN 118 FS EFFPP+ EG L + + A P ++ +T+ G GS +E S + + + Sbjct: 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITY---GAMGSTRERS--VAWAQRIQ 68 Query: 119 YCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQ--WEEEEGGFNYAV 176 GL + H+T Q +E+ LH+ + G++N++ALRGDP + + GF YA Sbjct: 69 SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAA 128 Query: 177 DLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTF 236 +LV IR +GD + A YP+GHPE+ S EADL+H K KV AG DF ITQLFF + Sbjct: 129 ELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAITQLFFNNAHY 188 Query: 237 FRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRN 296 F F++ GI PI+PGI P+ Y LR+ ++ +P + +E +D+ A+ Sbjct: 189 FGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLE 248 Query: 297 YGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 G+E AV ELL +G V G+HFYTLN+ AT VL+RLG+ Sbjct: 249 IGVEHAVRQVAELLEAG-VEGVHFYTLNKSPATRMVLERLGL 289 >3FST:1:A,C,E|pdbid|entity|chain(s)|sequence Length = 304 Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 146/279 (52%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++L ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >3FSU:1:A,C,E|pdbid|entity|chain(s)|sequence Length = 304 Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S +FFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++L ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >1B5T:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 275 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 6 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 61 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 62 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 116 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 117 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 174 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 175 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 234 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 235 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 272 >1ZRQ:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >1ZPT:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >1ZP3:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >1ZP4:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S +FFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFQFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AGA+ ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >2FMO:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 144/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AG + ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGVNRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 >2FMN:1:A,B,C|pdbid|entity|chain(s)|sequence Length = 304 Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 144/279 (51%), Gaps = 13/279 (4%) Query: 61 SLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC 120 S EFFPPRT+E L + DR+++ P ++ VT+ + G T S I + Sbjct: 26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTY--GANSGERDRTHS--IIKGIKDRT 81 Query: 121 GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGD-PIGDQWEEEEGGFNYAVDLV 179 GLE H+TC +E+ G+++I+ALRGD P G E YA DLV Sbjct: 82 GLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEM-----YASDLV 136 Query: 180 KHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRF 239 ++ E D FDI VA YP+ HPEA S +ADL +LK KV AG + ITQ FF+ +++ RF Sbjct: 137 TLLK-EVAD-FDISVAAYPEVHPEAKSAQADLLNLKRKVDAGVNRAITQFFFDVESYLRF 194 Query: 240 VKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGI 299 C GI I+PGI P+ + ++ ++ + +P + + + + D+ + G Sbjct: 195 RDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGA 254 Query: 300 ELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGM 338 +A+ + + L G V HFYTLNR + + LG+ Sbjct: 255 NIAMDMVKILSREG-VKDFHFYTLNRAEMSYAICHTLGV 292 Database: pdb_polypeptide Posted date: Nov 4, 2011 7:37 PM Number of letters in database: 24,477,413 Number of sequences in database: 103,242 Lambda K H 0.319 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 103242 Number of Hits to DB: 33,255,970 Number of extensions: 1474240 Number of successful extensions: 2944 Number of sequences better than 10.0: 15 Number of HSP's gapped: 2947 Number of HSP's successfully gapped: 15 Length of query: 656 Length of database: 24,477,413 Length adjustment: 108 Effective length of query: 548 Effective length of database: 13,327,277 Effective search space: 7303347796 Effective search space used: 7303347796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 65 (29.6 bits)