QuickPhyre Alignment of query sequence to fold library protein d1o5ka_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60...          .:....70. ...:....80....:....90....:....100....:....110....:....120  ....:....130....:....140....:....150....:....160....:....170....:....180....:....190....:..  ..200....:....210....:....220  ....:....230....:....240....:....250....:....260....:....270....:         ....280....:.. ..290....:....300....:....310....:....320....:....330....:....340....:..                     ..350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ------------------------------------------------------------                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ------------------------------------------------------------                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ------------------------------------------------------------                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %---------------------------------------------------------------          -------- -------------------------------------------------  -----------------------------------------------------------------------------  -----------------------  -------------------------------------------------------         ------------ ------------------------------------------------------------                     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213221122431230000000000000000142236000000000000000232212124          21431000 0011201011120110212212210112110010100211121121111  21112152231212111211120111113212132325412110101111120121132112111111021112112  31132110111011012114111  4312223422331102013111111011012211322310212110221112321         141121112111 111111011121112021101111110112253332311101013221221111111111                     322111110111211132231222122213111832444444431124244212132111000000000000273141121132012311321310000001111145120211232013111311231132332223612321121221245421233233223222321111111311111101012123112112210221111112233843443233124332211241282332412601071124211222212310212223332233334111212511212111111121111221113
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE----------ECCCCCCC-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC---------CCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCC---------------------CCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLE----------FFPPRTAE-GAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC--GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGY--PKGHPEAGSFEADLKHLKEKVSA--GVDFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE---------VPQEIKDVIEPI-KDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTEDPRRPL---------------------PWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                         +++-+++- -++++++-++++++--++++-+----++-++-++--- +++++++++++  +++++++  +-+-+-++--++++++++++++-++++    +---+++++      -+++++-++--+-- ++-+-++  +-+-----++++ ++++++++--  +    +-----++++++++++++++++-+--++++    +++--+++++  -+++         +++++++-++++ +++-++++++--++ +++++-++++++           +-++-++++-+++-+++-+-++                                                                                                                                                                                                                                                                                                                                          
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
d1o5ka_ Sequence---------------------------------------------------------------HMFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDER-EKLVSRTLEIVDGKIPVIVG--AGTNSTEKTLKLVKQAEKLGANGVLVV----TPYYNKPTQ------EGLYQHYKYISERT-DLGIVVYNVPGRTGVNVLPET-AARIAADLKNVVG----IKEANPDIDQIDRTVSLTKQARSDFMVWSG----NDDRTFYLLC--AGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKL-RPLMKALFVETN-----------PIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGLL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1o5ka_ Predicted Secondary Structure---------------------------------------------------------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCCH------HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHH-HHHHHHCCCCEEE----EECCCCCHHHHHHHHHHHHCCCCCEEEECC----CHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCC-----------CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1o5ka_ Known Secondary Structure--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                         1    22   2         1    11111  1 1         22  2                                                      2                                                                                            1111   11  1          1         11  11  1                         1             22    1   1            2                                                                                                                                                                                                                                                                                                                                           
Consensus Function 000000000000000000000000000000000000000000000000000000000000000          30000110 0100000000030000333330030300000000011001000000000  00000000000000000000000000000000000000000001000000000000000000000000000000000  00000000000000000000000  0000000000000000000000000000000033330003300300000000003         330033003000 000000000000000000000300000000000001100003000300000000000010                     000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                ....:....10....:....20....:....30....:....40....:....50....:. ...60....:....70....:.  ...80....:....90....:....100...    .:....110..      ..:....120....:. ...130....:....140....:.. ..150....:....160    ....:....170....:....180....:....190    ....:....200  ....:....210....:....220....:....230....:....240 ....:....250..           ..:....260....:....270....:....280....:....290....:                                                                                                                                                                                                                                                                                                                    

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found