QuickPhyre Alignment of query sequence to fold library protein d1hl2a_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60...          .:.  ...70....:....80....:....90....:....100....:....110....:....120  ....:....130....:....140....:....150....:....160....:....170....:....180....:....190....:..  ..200....:....210....:.       ...220....:....230....:....240....:....250....:....260....:....270....:         ....280....:.. ..290....:....300....:....310....:....320....:....330....:....340....:...                        .350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %---------------------------------------------------------------          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ -------------------------------------------------------------                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %---------------------------------------------------------------          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ -------------------------------------------------------------                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %---------------------------------------------------------------          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ -------------------------------------------------------------                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %---------------------------------------------------------------          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ -------------------------------------------------------------                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213221122431230000000000000000142236000000000000000232212124          214  310000011201011120110212212210112110010100211121121111  21112152231212111211120111113212132325412110101111120121132112111111021112112  3113211011101101211       41114312223422331102013111111011012211322310212110221112321         141121112111 1111110111211120211011111101122533323111010132212211111111113                        22111110111211132231222122213111832444444431124244212132111000000000000273141121132012311321310000001111145120211232013111311231132332223612321121221245421233233223222321111111311111101012123112112210221111112233843443233124332211241282332412601071124211222212310212223332233334111212511212111111121111221113
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                         XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE----------ECC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCHHHHHHHHHH-------HHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC---------CCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCC------------------------CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLE----------FFP--PRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC--GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGY--PKGHPEAGSFEADLKHLKE-------KVSAGVDFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE---------VPQEIKDVIEPI-KDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTEDPRRPLP------------------------WALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                         +-+  --++--++++++-++++++--++++-+----++-++-++--- +++++++++++  +++++++  +-+-+-++--++++++++++++-++++    ++--+++++      -+++++-+++-+---++-+-++  +++-----++++ ++++++       + ++--+            ++++ +++++++-++-++++    +++--++-++  -+++         +++-+++-++++ +++-++++++--++ +++++-++++++           +-++-++++-+++-++-+-++ +                                                                                                                                                                                                                                                                                                                                            
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
d1hl2a_ Sequence---------------------------------------------------------------TNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSER-EQVLEIVAEEAKGKIKLIAH--VGCVSTAESQQLAASAKRYGFDAVSAV----TPFYYPFSF------EEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQ-INTLVTLPGVGALK-QTSGD------------LYQM-EQIRREHPDLVLYNG----YDEIFASGLL--AGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTEC-NKVIDLLIKTGV-----------FRGLKTVLHYMDVVSVPLCRK-PFGPVDEKYLPELKALAQQLMQERG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1hl2a_ Predicted Secondary Structure---------------------------------------------------------------CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCCCCH------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHH-HHHHHCCCCEEEEE-CCCCC------------HHHH-HHHHHHCCCEEEEEC----CHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCC-----------CHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
d1hl2a_ Known Secondary Structure-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                         1                    1    11111  1 1                             1       5                            5  5           54   4             4   4         4     4                                           1 1111  511          5 51         11  11  1  5                      1  32 2       111 2 1   1         22   2                                                                                                                                                                                                                                                                                                                                            
Consensus Function 000000000000000000000000000000000000000000000000000000000000000          300  000000000000000030000333330030300000000000000000000000  00003000000000000000000000000000000000000000000000000000000000000000000000000  0000000000000000000       00000000000000000000000000000000003033330003300000000000003         330033003000 0000000000000000000003001101000000033301030003000000000110001                        00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                ....:....10....:....20....:....30....:....40....:....50....:.. ..60....:....70....:..  ..80....:....90....:....100....    :....110...      .:....120....:....130....:....140....:.... 150....:....160... .:...            .170.. ..:....180....:..    ..190....:..  ..200....:....210....:....220....:....230....:.. ..240....:....           250....:....260....:....270 ....:....280....:....290....:                                                                                                                                                                                                                                                                                                                   

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found