QuickPhyre Alignment of query sequence to fold library protein c2r8wA_

FASTA version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:....10....:....20....:....30....:....40....:....50....:....60...                                          .:.  ...70....:....80....:....90....:....100....:....110....:....120  ....:....130....:....140....:....150....:....160....:....170....:....180....:....190....:..  ..200....:....210....:.       ...220....:....230....:....240....:....250....:....260....:....270....:         ....280....:.. ..290....:....300....:....310....:         ...        .320....  :....330....:....340....:....350....:....360....:....370....:....380....:....390....:....400....:....410....:....420....:....430....:....440....:....450....:....460....:....470....:....480....:....490....:....500....:....510....:....520....:....530....:....540....:....550....:....560....:....570....:....580....:....590....:....600....:....610....:....620....:....630....:....640....:....650....:
Query Sequence Conservation 30 %---------------------------------------------------------------                                          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ ----------------------------         ---        ------  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 40 %---------------------------------------------------------------                                          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ ----------------------------         ---        ------  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 50 %---------------------------------------------------------------                                          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ ----------------------------         ---        ------  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Conservation 60 %---------------------------------------------------------------                                          ---  ------------------------------------------------------  -----------------------------------------------------------------------------  -------------------       -----------------------------------------------------------         ------------ ----------------------------         ---        ------  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Query Sequence Entropy (Normalised)222213221122431230000000000000000142236000000000000000232212124                                          214  310000011201011120110212212210112110010100211121121111  21112152231212111211120111113212132325412110101111120121132112111111021112112  3113211011101101211       41114312223422331102013111111011012211322310212110221112321         141121112111 1111110111211120211011111101         122        533323  11101013221221111111111322111110111211132231222122213111832444444431124244212132111000000000000273141121132012311321310000001111145120211232013111311231132332223612321121221245421233233223222321111111311111101012123112112210221111112233843443233124332211241282332412601071124211222212310212223332233334111212511212111111121111221113
Query Sequence Evolutionary Trace?XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                    XXXXXXXXXXXX
 
Query Predicted Secondary StructureCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE------------------------------------------ECC--CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCCCHHHHHHHHHH-------HHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC---------CCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCCC---------CCE--------EEEECC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Query SequenceMVNEARGNSSLNPCLEGSASSGSESSKDSSRCSTPGLDPERHERLREKMRRRLESGDKWFSLE------------------------------------------FFP--PRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYC--GLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGY--PKGHPEAGSFEADLKHLKE-------KVSAGVDFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLE---------VPQEIKDVIEPI-KDNDAAIRNYGIELAVSLCQELLASGLV---------PGL--------HFYTLN--REMATTEVLKRLGMWTEDPRRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLELLNRPTQNARETEAP
Match Quality                                                                                                         +-+  --++--++++++-+++++++-++++-+----++-++-++--- +++++++++++  +++++++  +-+-+-++--++++++++++++-++++    ++--+++++      -+++++-++--+-- ++-+-++  ++------++++ ++++++       +--++ +        ++++++++++++++++-+--++-+    ++--++++++  -+++         +++++++-++++ +++-++++++--++ +++++-+++++++         -++         +-+++  +-+++++++++++++++++                                                                                                                                                                                                                                                                                                                         
Alignment Accuracy                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
c2r8wA_ Sequence---------------------------------------------------------------MGSSHHHHHHSSGRENLYFQGMPIKARETDMATRFKGLSAFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREER-RRAIEAAATILRGRRTLMAG--IGALRTDEAVALAKDAEAAGADALLLA----PVSYTPLTQ------EEAYHHFAAVAGAT-ALPLAIYNNPTTTRFTFSDEL-LVRLAYIPNIRAIKMPLP-A--------DADYAGELARLRPKLSDDFAIGYS----GDWGCTDATL--AGGDTWYSVVAGLLPVPALQLMRAAQAGNAEEAKRLDATF-QPLWALFKEFGSIRVIYAAANILSLTVSEPPRP-ILPLTSAERQRVEEALEALSALETAP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
c2r8wA_ Predicted Secondary Structure---------------------------------------------------------------CCCCHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCH------HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHH-HHHHHCCCCEEEEEECCC-C--------CHHHHHHHHHHHHHCCCCEEEECC----CHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
c2r8wA_ Known Secondary Structure--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 
Model Pockets/Cavities/Clefts                                                                                                         1    1           1  11  1 11111  1 1  22                             2       2              1                                          1 1                             1                                1 111   1111 11                      1  111             11  11  1  11     1                    1       11  1   1  1                                                                                                                                                                                                                                                                                                                                
Consensus Function 000000000000000000000000000000000000000000000000000000000000000                                          300  300000000000300330030333330030300110000000000000000000  00000000100000001000000000000003000000000000000000000000000000000000000000303  0000000000000000000       03000000000000000000000000000000003033300033330330000000000         000300333000 0000000003300330030033000003         000        300000  33003000300300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Template Index                                                                ....:....10....:....20....:....30....:....40....:....50....:....60....:....70....:....80....:.... 90....:....100....:....  110....:....120....:....130....:.    ...140....:      ....150....:.... 160....:....170....:....180 ....:....190....:... .        200....:....210....:....220...    .:....230...  .:....240....:....250....:....260....:....270... .:....280....:....290....:....300....:. ...310....:....320....:....330..                                                                                                                                                                                                                                                                                                                        

Consensus Functional Sites Mapped onto Model
No high scoring functional sites found